SentenceTransformer

This is a sentence-transformers model trained on the parquet dataset. It maps sentences & paragraphs to a 384-dimensional dense vector space and can be used for semantic textual similarity, semantic search, paraphrase mining, text classification, clustering, and more.

Model Details

Model Description

• Model Type: Sentence Transformer

• Maximum Sequence Length: 1024 tokens
• Output Dimensionality: 384 dimensions
• Similarity Function: Cosine Similarity
• Training Dataset:
  • parquet

Model Sources

• Documentation: Sentence Transformers Documentation
• Repository: Sentence Transformers on GitHub
• Hugging Face: Sentence Transformers on Hugging Face

Full Model Architecture

SentenceTransformer(
  (0): Transformer({'max_seq_length': 1024, 'do_lower_case': False}) with Transformer model: BertModel 
  (1): Pooling({'word_embedding_dimension': 384, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False, 'pooling_mode_weightedmean_tokens': False, 'pooling_mode_lasttoken': False, 'include_prompt': True})
)

Usage

Direct Usage (Sentence Transformers)

First install the Sentence Transformers library:

pip install -U sentence-transformers

Then you can load this model and run inference.

from sentence_transformers import SentenceTransformer

# Download from the 🤗 Hub
model = SentenceTransformer("pankajrajdeo/Bioformer-16L-UMLS-Pubmed_PMC-Forward_TCE-Epoch-3-MSMARCO-Epoch-5")
# Run inference
sentences = [
    'does the columbus zoo sell beer',
    'No glass and/or alcohol are permitted at the Columbus Zoo. This means that they do not sell alcoholic beverages.',
    'Eviction law allows landlords to still ask you to move out, but you must be afforded some extra protections. First, for eviction notices without cause, the landlord must give you a longer period of notice to vacate, generally 30 or 60 days. This lengthened time period is designed to allow you to find another place to live.',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 384]

# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [3, 3]

Training Details

Training Dataset

parquet

• Dataset: parquet
• Size: 39,780,704 training samples
• Columns: anchor and positive
• Approximate statistics based on the first 1000 samples:

  	anchor	positive
  type	string	string
  details	min: 4 tokensmean: 9.85 tokensmax: 38 tokens	min: 15 tokensmean: 87.54 tokensmax: 246 tokens

• Samples:

  anchor	positive
  is a little caffeine ok during pregnancy	We don’t know a lot about the effects of caffeine during pregnancy on you and your baby. So it’s best to limit the amount you get each day. If you’re pregnant, limit caffeine to 200 milligrams each day. This is about the amount in 1½ 8-ounce cups of coffee or one 12-ounce cup of coffee.
  what fruit is native to australia	Passiflora herbertiana. A rare passion fruit native to Australia. Fruits are green-skinned, white fleshed, with an unknown edible rating. Some sources list the fruit as edible, sweet and tasty, while others list the fruits as being bitter and inedible.assiflora herbertiana. A rare passion fruit native to Australia. Fruits are green-skinned, white fleshed, with an unknown edible rating. Some sources list the fruit as edible, sweet and tasty, while others list the fruits as being bitter and inedible.
  how large is the canadian military	The Canadian Armed Forces. 1 The first large-scale Canadian peacekeeping mission started in Egypt on November 24, 1956. 2 There are approximately 65,000 Regular Force and 25,000 reservist members in the Canadian military. 3 In Canada, August 9 is designated as National Peacekeepers’ Day.

• Loss: MultipleNegativesRankingLoss with these parameters:

  {
      "scale": 20.0,
      "similarity_fct": "cos_sim"
  }
  

Evaluation Dataset

parquet

• Dataset: parquet
• Size: 39,780,704 evaluation samples
• Columns: anchor and positive
• Approximate statistics based on the first 1000 samples:

  	anchor	positive
  type	string	string
  details	min: 4 tokensmean: 9.97 tokensmax: 28 tokens	min: 28 tokensmean: 85.19 tokensmax: 228 tokens

• Samples:

  anchor	positive
  chemical weathering definition	Chemical weathering is the process where rocks and minerals, which originally formed deep underground at much higher temperatures and pressures, gradually transform into different chemical compounds once they are exposed to air and water at the surface.
  what is the difference between breathe and breath	• The word breath is used as noun. • On the other hand, the word breathe is used as verb. This is the main difference between the two words. • The word breath is used in the sense of ‘air taken in and out during breathing’. • On the other hand, the word breathe is used in the sense of ‘take air into the lungs and then let it out’. • The word breathe is sometimes used with the expression ‘his/her last’, and it gives the meaning of ‘die.’ This is used for both breath and breathe. His last breath, breathed her last.
  what is natural neck tightening	Use Sunscreen: One of the best, and a natural method for tightening skin includes applying sunscreen on the face and neck area. This will help to protect against UV rays that can be harmful and help to prevent the premature aging of your skin.

• Loss: MultipleNegativesRankingLoss with these parameters:

  {
      "scale": 20.0,
      "similarity_fct": "cos_sim"
  }
  

Training Hyperparameters

Non-Default Hyperparameters

• eval_strategy: steps
• per_device_train_batch_size: 128
• learning_rate: 2e-05
• num_train_epochs: 5
• max_steps: 1476235
• log_level: info
• fp16: True
• dataloader_num_workers: 16
• load_best_model_at_end: True
• resume_from_checkpoint: True

All Hyperparameters

• overwrite_output_dir: False
• do_predict: False
• eval_strategy: steps
• prediction_loss_only: True
• per_device_train_batch_size: 128
• per_device_eval_batch_size: 8
• per_gpu_train_batch_size: None
• per_gpu_eval_batch_size: None
• gradient_accumulation_steps: 1
• eval_accumulation_steps: None
• torch_empty_cache_steps: None
• learning_rate: 2e-05
• weight_decay: 0.0
• adam_beta1: 0.9
• adam_beta2: 0.999
• adam_epsilon: 1e-08
• max_grad_norm: 1.0
• num_train_epochs: 5
• max_steps: 1476235
• lr_scheduler_type: linear
• lr_scheduler_kwargs: {}
• warmup_ratio: 0.0
• warmup_steps: 0
• log_level: info
• log_level_replica: warning
• log_on_each_node: True
• logging_nan_inf_filter: True
• save_safetensors: True
• save_on_each_node: False
• save_only_model: False
• restore_callback_states_from_checkpoint: False
• no_cuda: False
• use_cpu: False
• use_mps_device: False
• seed: 42
• data_seed: None
• jit_mode_eval: False
• use_ipex: False
• bf16: False
• fp16: True
• fp16_opt_level: O1
• half_precision_backend: auto
• bf16_full_eval: False
• fp16_full_eval: False
• tf32: None
• local_rank: 0
• ddp_backend: None
• tpu_num_cores: None
• tpu_metrics_debug: False
• debug: []
• dataloader_drop_last: False
• dataloader_num_workers: 16
• dataloader_prefetch_factor: None
• past_index: -1
• disable_tqdm: False
• remove_unused_columns: True
• label_names: None
• load_best_model_at_end: True
• ignore_data_skip: False
• fsdp: []
• fsdp_min_num_params: 0
• fsdp_config: {'min_num_params': 0, 'xla': False, 'xla_fsdp_v2': False, 'xla_fsdp_grad_ckpt': False}
• fsdp_transformer_layer_cls_to_wrap: None
• accelerator_config: {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}
• deepspeed: None
• label_smoothing_factor: 0.0
• optim: adamw_torch
• optim_args: None
• adafactor: False
• group_by_length: False
• length_column_name: length
• ddp_find_unused_parameters: None
• ddp_bucket_cap_mb: None
• ddp_broadcast_buffers: False
• dataloader_pin_memory: True
• dataloader_persistent_workers: False
• skip_memory_metrics: True
• use_legacy_prediction_loop: False
• push_to_hub: False
• resume_from_checkpoint: True
• hub_model_id: None
• hub_strategy: every_save
• hub_private_repo: None
• hub_always_push: False
• gradient_checkpointing: False
• gradient_checkpointing_kwargs: None
• include_inputs_for_metrics: False
• include_for_metrics: []
• eval_do_concat_batches: True
• fp16_backend: auto
• push_to_hub_model_id: None
• push_to_hub_organization: None
• mp_parameters:
• auto_find_batch_size: False
• full_determinism: False
• torchdynamo: None
• ray_scope: last
• ddp_timeout: 1800
• torch_compile: False
• torch_compile_backend: None
• torch_compile_mode: None
• dispatch_batches: None
• split_batches: None
• include_tokens_per_second: False
• include_num_input_tokens_seen: False
• neftune_noise_alpha: None
• optim_target_modules: None
• batch_eval_metrics: False
• eval_on_start: False
• use_liger_kernel: False
• eval_use_gather_object: False
• average_tokens_across_devices: False
• prompts: None
• batch_sampler: batch_sampler
• multi_dataset_batch_sampler: proportional

Training Logs