PlantHelixSeek-CRE
Fine-tuned from PlantHelixSeek for cis-regulatory element (CRE) prediction — binary classification of open-chromatin / CRE regions.
Task
- Type: Sequence classification (binary)
- Base model: PlantHelixSeek (470M)
Usage
from transformers import AutoModelForSequenceClassification, AutoTokenizer
model = AutoModelForSequenceClassification.from_pretrained(
"zhangtaolab/PlantHelixSeek-CRE", trust_remote_code=True
)
tokenizer = AutoTokenizer.from_pretrained(
"zhangtaolab/PlantHelixSeek-CRE", trust_remote_code=True
)
Full genome-wide CRE prediction + peak calling pipeline: see scripts/cis_regulatory/.
License
CC-BY-NC 4.0