PlantHelixSeek-open_chromatin
Fine-tuned checkpoint of PlantHelixSeek (470M params) for Open chromatin region prediction.
Task
- Type: binary
- Dataset: plant-multi-species-open-chromatin · ModelScope
Training
- Base model: PlantHelixSeek
- Epochs: 3
- Train loss: 0.5443456338243229
Usage
from transformers import AutoModelForSequenceClassification, AutoTokenizer
model = AutoModelForSequenceClassification.from_pretrained(
"zhangtaolab/PlantHelixSeek-open_chromatin", trust_remote_code=True
)
tokenizer = AutoTokenizer.from_pretrained(
"zhangtaolab/PlantHelixSeek-open_chromatin", trust_remote_code=True
)
Always pass trust_remote_code=True — the HelixSeek architecture is registered via HuggingFace auto_map.
License
CC-BY-NC 4.0 (research use; contact authors for commercial licensing)